Removal of journal titles

This is the place where I'll capture my scientific life of publications.
It'll come to a halt over the next year or two (yes, that's the expected lag period between
doing the work and getting the results out there).

My papers cover these domains:
You can focus the search by key term (category - the big grouping), tags (more finely grained), author or year, using the panel ono the right. The size of the tag reflects how often it appears.


visualization


You can also see the decline in my influence on the fields by the
decline in the number of times your work is cited. Also to be expected.

Screenshot 2021-10-26 at 22.32.21


Here's a another weakness of our system in academia. There is a tendency to applaud papers that appear in 'high impact journals'. There's no such thing!. There are journals that have become part of a self serving scam where they create scarcity (chances of getting in are low) in order to creat the illusion, and then charge a bloody fortune to get in - which you, the tax payer pays for.

So, please reject the notion that
WHERE something is published seems to be more important that WHAT research was actually conducted. The obsession with so-called ‘prestige titles’ is devaluing the great majority of carefully conducted studies that provide the foundation upon which all science is based.

I have therefore decided to remove journal titles from the outward description of my published work. You can read the title and the abstract, to decide whether this is a research paper you wish to read, rather than dismissing a paper as ‘not in the best journals’. You might say that this is not an issue, but tell that to those reading CV’s and conducting job interviews.
[Abstract...]

Using proteomics to quantify metabolic pathways

Elsemman IE, Rodriguez Prado A, Grigaitis P, Garcia Albornoz M, Harman V, Holman SW, van Heerden J, Bruggeman FJ, Bisschops MMM, Sonnenschein N, Hubbard S, Beynon R, Daran-Lapujade P, Nielsen J, Teusink B. (2022) Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies. [PUBMED] [Abstract...]

Proteomics of epileptogenesis

Karen Tse, Edward Beamer, Deborah Simpson, Robert J Beynon, Graeme J Sills, Thimmasettappa Thippeswamy (2021) The Impacts of Surgery and Intracerebral Electrodes in C57BL/6J Mouse Kainate Model of Epileptogenesis: Seizure Threshold, Proteomics, and Cytokine Profiles Front Neurol Jul 12;12:625017. doi: 10.3389/fneur.2021.625017 [PDF] [PUBMED] [DOI] [Abstract...]

Influence of viruses on MUP production

Michael B A Oldstone, Brian C Ware, Amanda Davidson, Mark C Prescott, Robert J Beynon, Jane L Hurst (2021) Lymphocytic Choriomeningitis Virus Alters the Expression of Male Mouse Scent Proteins. Viruses Jun 21;13(6):1180. doi: 10.3390/v13061180. [PDF] [PUBMED] [DOI]
[Abstract...]

March of the acronyms.. ALACATs (a la carte proteomics)

James Johnson, Victoria M Harman, Catarina Franco, Edward Emmott, Nichola Rockliffe, Yaqi Sun, Lu-Ning Liu, Ayako Takemori, Nobuaki Takemori, Robert J Beynon (2021) Construction of à la carte QconCAT protein standards for multiplexed quantification of user-specified target proteins (2021) BMC Biol 2021 Sep 8;19(1):195. doi: 10.1186/s12915-021-01135-9. [PDF] [PUBMED] [DOI] [Abstract...]

On catnip and mosquitoes - solving an evolutionary puzzle

Reiko Uenoyama, Tamako Miyazaki, Jane L. Hurst, eRobert J. Beynon, Masaatsu Adachi, Takanobu Murooka, Ibuki Onoda, eYu Miyazawa, Rieko Katayama, Tetsuro Yamashita, Shuji Kaneko, Toshio Nishikawa and Masao Miyazaki (2021) The characteristic response of domestic cats to plant iridoids allows them to gain chemical defense against mosquitoes Science Advances Vol. 7, no. 4, eabd9135 DOI: 10.1126/sciadv.abd9135 [PDF] [PUBMED] [DOI] [Abstract...]

CSF proteomics in bacterial meningitis

Emma C Wall, Philip Brownridge, Gavin Laing, Vanessa S Terra, Veronica Mlozowa, Brigitte Denis, Mulinda Nyirenda, Theresa Allain, Elisa Ramos-Sevillano, Enitan Carrol, Andrea Collins, Stephen B Gordon, David G Lalloo, Brendan Wren, Robert Beynon, Robert S Heyderman, Jeremy S Brown (2020) CSF Levels of Elongation Factor Tu Is Associated With Increased Mortality in Malawian Adults With Streptococcus pneumoniae Meningitis Front Cell Infect Microbiol doi: 10.3389/fcimb.2020.603623. eCollection 2020. [PDF][PUBMED][DOI] [Abstract...]

First 'zap the crap', now 'Fry the fly': REIMS for insect identification

Iris Wagner, Natalie I. Koch, Joscelyn Sarsby, Nicola White, Tom A. R. Price, Sam Jones, Jane L. Hurst, Robert J. Beynon, (2020) The application of rapid evaporative ionisation mass spectrometry (REIMS) in the analysis of Drosophila species – a potential new tool in entomology [PDF] [PUBMED] [DOI] [Abstract...]

Using stable isotopes to track sperm competition

Paula Stockley, Catarina Franco, Amy J. Claydon, Amanda Davidson, Dean E. Hammond, Philip J. Brownridge, Jane L. Hurst, and Robert J. Beynon (2020) Revealing mechanisms of mating plug function under sexual selection. [PDF] [PUBMED] [DOI] [Abstract...]

Plasticity of the mouse seminal vesical fluid proteome

Helen L Bayram, Catarina Franco, Philip Brownridge, Amy J Claydon, Natalie Koch, Jane L Hurst, Robert J Beynon, Paula Stockley (2020) Social status and ejaculate composition in the house mouse [PDF] [PUBMED] [DOI] [Abstract...]

Using QconCATs to establish protein complex stoichiometry

Mengru Yang, Deborah M Simpson, Nicolas Wenner, Philip Brownridge, Victoria M Harman, Jay C D Hinton, Robert J Beynon, Lu-Ning Liu (2020) Decoding the stoichiometric composition and organisation of bacterial metabolosomes [PDF] [PUBMED] [DOI] [Abstract...]

MS from gels, top down or bottom up

Ayako Takemori, David S Butcher, Victoria M Harman, Philip Brownridge, Keisuke Shima, Daisuke Higo, Jun Ishizaki, Hitoshi Hasegawa, Junpei Suzuki, Masakatsu Yamashita, Joseph A Loo, Rachel R Ogorzalek Loo, Robert J Beynon, Lissa C Anderson, Nobuaki Takemori (2020) PEPPI-MS: Polyacrylamide-Gel-Based Prefractionation for Analysis of Intact Proteoforms and Protein Complexes by Mass Spectrometry [PDF] [PUBMED] [DOI] [Abstract...]

An unusual marsupial urinary lipocalin - vulpeculin

Grace M. Loxley, David O. Hooks, Aristotelis Antonopoulos, Anne Dell, Stuart M. Haslam, Wayne L. Linklater, Jane L. Hurst and Robert J. Beynon (2020) Vulpeculin: a novel and abundant lipocalin in the urine of the common brushtail possum, Trichosurus vulpecula. Open Biology Open Biol. 10: 200218. http://dx.doi.org/10.1098/rsob.200218 [PDF] [PUBMED] [DOI] [Abstract...]

Using proteomics to explore 'pseudogene' expression

Ian Goodhead, Frances Blow, Philip Brownridge, Margaret Hughes, John Kenny, Ritesh Krishna, Lynn McLean, Pisut Pongchaikul, Rob Beynon and Alistair C. Darby (202o) Large-scale and significant expression from pseudogenes in Sodalis glossinidius – a facultative bacterial endosymbiont [PDF] [PUBMED] [DOI] [Abstract...]

Global proteomics of carbon source metabolism in Saccharomyces

M Garcia-Albornoz 1, S W Holman, T Antonisse, P Daran-Lapujade, B Teusink, R J Beynon, S J Hubbard (2020) A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae. [PDF] [PUBMED] [DOI] [Abstract...]

Darcin and the neural circuits it activates

Ebru Demir, Kenneth Li, Natasha Bobrowski-Khoury, Joshua I Sanders, Robert J Beynon, Jane L Hurst, Adam Kepecs, Richard Axel (2020) The pheromone darcin drives a circuit for innate and reinforced behaviours [PDF] [PUBMED] [DOI] [Abstract...]

Using proteomics to identify targets for schistosomiasis

Leandro X Neves, R Alan Wilson, Philip Brownridge, Victoria M Harman, Stephen W Holman, Robert J Beynon, Claire E Eyers, Ricardo DeMarco, William Castro-Borges (2020) Quantitative Proteomics of Enriched Esophageal and Gut Tissues from the Human Blood Fluke Schistosoma mansoni Pinpoints Secreted Proteins for Vaccine Development. [PDF] [PUBMED] [DOI] [Abstract...]

REIMS for the analysis of bacterial protein production

Joscelyn Sarsby, Lynn McLean, Victoria M Harman, Robert J Beynon (2019) Monitoring recombinant protein expression in bacteria by rapid evaporative ionisation mass spectrometry. [PDF] [PUBMED] [DOI] [Abstract...]

Zap the crap! Using REIMS to obtain valuable information from animal faeces

Davidson NB, Koch NI, Sarsby J, Jones E, Hurst JL, Beynon RJ. (2019) Rapid identification of species, sex and maturity by mass spectrometric analysis of animal faeces. [PDF][PUBMED] [Abstract...]

Detailed protein analysis of the rat MUP complex

Guadalupe Gómez-Baena, Stuart D. Armstrong, Josiah O. Halstead, Mark Prescott, Sarah A. Roberts, Lynn McLean, Jonathan M. Mudge, Jane L. Hurst & Robert J. Beynon (2019) Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus. [PDF] [PUBMED] [Abstract...]